X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fcommands%2FRemoveGapsCommand.java;h=db1725b5a7158f0a23f73a85e152a88990a41deb;hb=c760e120c2900ce64e03d0923cc74dde065ba701;hp=2e8d7444b9204d57edaece8757e7ef53ac51a95a;hpb=47168f025aefdaa044802bd5f8f510ffe43a4808;p=jalview.git diff --git a/src/jalview/commands/RemoveGapsCommand.java b/src/jalview/commands/RemoveGapsCommand.java index 2e8d744..db1725b 100644 --- a/src/jalview/commands/RemoveGapsCommand.java +++ b/src/jalview/commands/RemoveGapsCommand.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -39,7 +39,8 @@ package jalview.commands; * Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA */ -import jalview.datamodel.*; +import jalview.datamodel.AlignmentI; +import jalview.datamodel.SequenceI; public class RemoveGapsCommand extends EditCommand { @@ -74,7 +75,7 @@ public class RemoveGapsCommand extends EditCommand int j, jSize; - edits = new Edit[0]; + clearEdits(); boolean delete = true; char[] sequence; @@ -108,7 +109,7 @@ public class RemoveGapsCommand extends EditCommand if (!delete && startCol > -1) { - this.appendEdit(DELETE_GAP, new SequenceI[] + this.appendEdit(Action.DELETE_GAP, new SequenceI[] { seqs[s] }, start + startCol - deletedCols, endCol - startCol, al, false, null); @@ -119,7 +120,7 @@ public class RemoveGapsCommand extends EditCommand } if (delete && startCol > -1) { - this.appendEdit(DELETE_GAP, new SequenceI[] + this.appendEdit(Action.DELETE_GAP, new SequenceI[] { seqs[s] }, start + startCol - deletedCols, jSize - startCol, al, false, null); }