X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fcontroller%2FAlignViewController.java;h=8b001b30c8306298dac113ce0c0e8d7b4583e791;hb=d2fbfb17ae43c983123e18a0ef1074c2aba907ff;hp=7bb295e110651943b41cfb33c08196908c202f7e;hpb=19bf96b1bcedc7c00f97e1947d889c24fec48ae7;p=jalview.git diff --git a/src/jalview/controller/AlignViewController.java b/src/jalview/controller/AlignViewController.java index 7bb295e..8b001b3 100644 --- a/src/jalview/controller/AlignViewController.java +++ b/src/jalview/controller/AlignViewController.java @@ -247,12 +247,11 @@ public class AlignViewController implements AlignViewControllerI boolean found = false; for (SequenceFeature sf : sfs) { - { - if (!visibleFeatures.contains(sf.getType()) - || fr.getColour(sf) == null) // could pull up getColour to - // FeatureRenderer interface - { - continue; + { + if (!visibleFeatures.contains(sf.getType()) + || fr.getColour(sf) == null) // could pull up getColour to FeatureRenderer interface + { + continue; } } if (!found) @@ -260,6 +259,7 @@ public class AlignViewController implements AlignViewControllerI nseq++; } found = true; + int sfStartCol = sq.findIndex(sf.getBegin()); int sfEndCol = sq.findIndex(sf.getEnd());