X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignedCodonFrame.java;h=4fbfd62c26796f64fb6d9b1ab1cb335554ae7322;hb=86fd4dbafd6175d651fe569c0861de10029cc7b8;hp=326cc4ea6c8e5c921d0accd877acf2ed47042a6d;hpb=6395e8fc1fc6b33c3b305d74d9be3642dfca8417;p=jalview.git

diff --git a/src/jalview/datamodel/AlignedCodonFrame.java b/src/jalview/datamodel/AlignedCodonFrame.java
index 326cc4e..4fbfd62 100644
--- a/src/jalview/datamodel/AlignedCodonFrame.java
+++ b/src/jalview/datamodel/AlignedCodonFrame.java
@@ -93,8 +93,8 @@ public class AlignedCodonFrame
       return (this.fromSeq == that.fromSeq || (this.fromSeq != null
               && that.fromSeq != null
               && this.fromSeq.getDatasetSequence() != null && this.fromSeq
-              .getDatasetSequence() == that.fromSeq
-              .getDatasetSequence())) && this.mapping.equals(that.mapping);
+              .getDatasetSequence() == that.fromSeq.getDatasetSequence()))
+              && this.mapping.equals(that.mapping);
     }
 
     public SequenceI getFromSeq()
@@ -301,7 +301,7 @@ public class AlignedCodonFrame
    *          where highlighted regions go
    */
   public void markMappedRegion(SequenceI seq, int index,
-          SearchResults results)
+          SearchResultsI results)
   {
     int[] codon;
     SequenceI ds = seq.getDatasetSequence();
@@ -719,8 +719,8 @@ public class AlignedCodonFrame
   }
 
   /**
-   * Returns the first mapping found that is between 'fromSeq' and 'toSeq', or null
-   * if none found
+   * Returns the first mapping found that is between 'fromSeq' and 'toSeq', or
+   * null if none found
    * 
    * @param fromSeq
    *          aligned or dataset sequence