X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignedCodonFrame.java;h=fffa13759a9c1cc7c9b9048ce11257d272502e71;hb=fae3e22852fa6338881ea68faf15e194824635a1;hp=26f6e2a9b503b63648968c3a0e9b2b088e28eecb;hpb=3740241b6d0dfa109dc81847afe58f17497c39e8;p=jalview.git

diff --git a/src/jalview/datamodel/AlignedCodonFrame.java b/src/jalview/datamodel/AlignedCodonFrame.java
index 26f6e2a..fffa137 100644
--- a/src/jalview/datamodel/AlignedCodonFrame.java
+++ b/src/jalview/datamodel/AlignedCodonFrame.java
@@ -220,12 +220,12 @@ public class AlignedCodonFrame
 
   /**
    * Returns the first mapping found which is to or from the given sequence, or
-   * null.
+   * null if none is found
    * 
    * @param seq
    * @return
    */
-  public Mapping getMappingForSequence(SequenceI seq, boolean cdsOnly)
+  public Mapping getMappingForSequence(SequenceI seq)
   {
     SequenceI seqDs = seq.getDatasetSequence();
     seqDs = seqDs != null ? seqDs : seq;
@@ -234,11 +234,7 @@ public class AlignedCodonFrame
     {
       if (ssm.fromSeq == seqDs || ssm.mapping.to == seqDs)
       {
-        if (!cdsOnly || ssm.fromSeq.getName().startsWith("CDS")
-                || ssm.mapping.to.getName().startsWith("CDS"))
-        {
-          return ssm.mapping;
-        }
+        return ssm.mapping;
       }
     }
     return null;