X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignment.java;h=91108bc4b9d64d6ab7fedc08accd5bab98330fb0;hb=243951bc32e308e5fbd57860336fdb3e39ebd822;hp=f31fcd86db8125753fc552d7cbc54821b668bffe;hpb=adab53c4c18c70862109c1fdc33904e71aa005cf;p=jalview.git

diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java
index f31fcd8..91108bc 100755
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -1612,6 +1612,10 @@ public class Alignment implements AlignmentI
     {
       return false;
     }
+
+    // TODO: match sequence ids, allow different sequence ordering?
+    // TODO: allow for stop/start codons?
+    // TODO: exclude introns
     int i = 0;
     for (SequenceI seq : this.getSequences())
     {