X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignment.java;h=98510e39524e0b415780f424ca6f323ba53ca583;hb=595a9e25db7f4f24c17de84656d7d5391a3d104d;hp=91b29dab36366a690ae14c900592638e4e135ea0;hpb=51ca42a8c4525c6871e3c8ea529b6cb8a59bb10f;p=jalview.git

diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java
index 91b29da..98510e3 100755
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -414,12 +414,12 @@ public class Alignment implements AlignmentI
 
     synchronized (groups)
     {
-      temp.clear();
       int gSize = groups.size();
       if (gSize == 0)
       {
         return noGroups;
       }
+      temp.clear();
       for (int i = 0; i < gSize; i++)
       {
         SequenceGroup sg = groups.get(i);
@@ -2034,4 +2034,17 @@ public class Alignment implements AlignmentI
     }
   }
 
+  @Override
+  public void resetColors()
+  {
+    for (int i = getHeight(); --i >= 0;)
+    {
+      sequences.get(i).resetColors();
+    }
+    // if (dataset != null)
+    // {
+    // dataset.resetColors();
+    // }
+  }
+
 }