X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentAnnotation.java;h=1594f2be3b7579bf4fd28f05704b612df9abc460;hb=5ea3aac765826cdf87a68faf27fe539e2b38a277;hp=543958e8bd1bf7bfb5ce134976a587c5c9160fcb;hpb=eb2c919a6ad59d6447fcba2597d044ac7ca749b8;p=jalview.git diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java index 543958e..1594f2b 100755 --- a/src/jalview/datamodel/AlignmentAnnotation.java +++ b/src/jalview/datamodel/AlignmentAnnotation.java @@ -20,6 +20,10 @@ */ package jalview.datamodel; +import jalview.analysis.Rna; +import jalview.analysis.SecStrConsensus.SimpleBP; +import jalview.analysis.WUSSParseException; + import java.util.Collection; import java.util.Collections; import java.util.HashMap; @@ -28,10 +32,6 @@ import java.util.List; import java.util.Map; import java.util.Map.Entry; -import jalview.analysis.Rna; -import jalview.analysis.SecStrConsensus.SimpleBP; -import jalview.analysis.WUSSParseException; - /** * DOCUMENT ME! * @@ -1150,14 +1150,14 @@ public class AlignmentAnnotation * @param colSel */ public AlignmentAnnotation(AlignmentAnnotation alignmentAnnotation, - ColumnSelection colSel) + HiddenColumns hidden) { this(alignmentAnnotation); if (annotations == null) { return; } - colSel.makeVisibleAnnotation(this); + hidden.makeVisibleAnnotation(this); } public void setPadGaps(boolean padgaps, char gapchar)