X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentAnnotation.java;h=1d624d4adf16d2b94da968b2ca9b8b3c2b1ca032;hb=3492dd1b00c0cd49ea8dc14a5a2d717ac3ff9e8a;hp=236e8ee0cb95d0d05742333eacd04f108d5f71dc;hpb=63cbb86a2d771d2d99d2f38a7b6cf639bf5c19c8;p=jalview.git diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java index 236e8ee..1d624d4 100755 --- a/src/jalview/datamodel/AlignmentAnnotation.java +++ b/src/jalview/datamodel/AlignmentAnnotation.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6) - * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) + * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle * * This file is part of Jalview. * @@ -813,6 +813,12 @@ public class AlignmentAnnotation { if (seqname && this.sequenceRef != null) { + int i=description.toLowerCase().indexOf(""); + if (i>-1) + { + // move the html tag to before the sequence reference. + return ""+sequenceRef.getName()+" : "+description.substring(i+6); + } return sequenceRef.getName() + " : " + description; } return description;