X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentAnnotation.java;h=4861dfd77575b67226c39b3fc9602eed3538d4d0;hb=06379070d6c2267efe3a30926d84c51a48d1cdce;hp=636088bdf0665d47efb1eb75d5908ddaeb2db0be;hpb=892e857760e779796e156b4fa36d97d8d31e73e1;p=jalview.git diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java index 636088b..4861dfd 100755 --- a/src/jalview/datamodel/AlignmentAnnotation.java +++ b/src/jalview/datamodel/AlignmentAnnotation.java @@ -34,6 +34,7 @@ import java.util.Map.Entry; import jalview.analysis.Rna; import jalview.analysis.SecStrConsensus.SimpleBP; import jalview.analysis.WUSSParseException; +import jalview.structure.StructureImportSettings; /** * DOCUMENT ME! @@ -96,22 +97,17 @@ public class AlignmentAnnotation */ private long invalidrnastruc = -2; - public static enum TFType - { - DEFAULT, PLDDT, DOSE; - } - /** * the type of temperature factor plot (if it is one) */ - private TFType tfType = TFType.DEFAULT; + private StructureImportSettings.TFType tfType = StructureImportSettings.TFType.DEFAULT; - public void setTFType(TFType t) + public void setTFType(StructureImportSettings.TFType t) { tfType = t; } - public TFType getTFType() + public StructureImportSettings.TFType getTFType() { return tfType; } @@ -310,7 +306,7 @@ public class AlignmentAnnotation public static final int LINE_GRAPH = 2; - public static final int CUSTOMRENDERER = 4; + public static final int CONTACT_MAP = 4; public boolean belowAlignment = true;