X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentAnnotation.java;h=8f826f558cd2debb82e44f5843bb429e290f0c8c;hb=c9a198a4eb76592ff9091cdba7d0299a0345ba09;hp=e8e8d017e2311ccb5cc7675c18ea3ac6aa89b1db;hpb=e5cba1e6a138feeeb8cf5b5823b3cafc89e71b9f;p=jalview.git

diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java
index e8e8d01..8f826f5 100755
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -51,8 +51,6 @@ public class AlignmentAnnotation
 
   public static final int CDNA_PROFILE = 2;
 
-  HiddenMarkovModel hmm;
-
   private static long counter = 0;
 
   /**
@@ -1506,13 +1504,4 @@ public class AlignmentAnnotation
     return graphMin < graphMax;
   }
 
-  public void setHMM(HiddenMarkovModel markov)
-  {
-    hmm = markov;
-  }
-
-  public HiddenMarkovModel getHMM()
-  {
-    return hmm;
-  }
 }