X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentAnnotation.java;h=8f826f558cd2debb82e44f5843bb429e290f0c8c;hb=d6cace53173ae859bfd93f5e8a13be427864afd1;hp=31aeecc00e544ea8c4697aeadb53983ba00b318e;hpb=2e6deb5d089d95ce34b15828766479b4f7803f5c;p=jalview.git

diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java
index 31aeecc..8f826f5 100755
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -53,8 +53,6 @@ public class AlignmentAnnotation
 
   private static long counter = 0;
 
-  private HiddenMarkovModel hmm;
-
   /**
    * If true, this annotations is calculated every edit, eg consensus, quality
    * or conservation graphs
@@ -1506,23 +1504,4 @@ public class AlignmentAnnotation
     return graphMin < graphMax;
   }
 
-  /**
-   * Returns the HMM associated with this annotation.
-   * 
-   * @return
-   */
-  public HiddenMarkovModel getHMM()
-  {
-    return hmm;
-  }
-
-  /**
-   * Sets the HMM associated with this annotation.
-   * 
-   * @param hmm
-   */
-  public void setHMM(HiddenMarkovModel hmm)
-  {
-    this.hmm = hmm;
-  }
 }