X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentAnnotation.java;h=f5d34a64835791d768e7809a3b709c7fe79877c0;hb=3d731dad51b259b16c50834ec24550280fb7dd64;hp=9de07ddcc2b41f3fd9e44466e745f7067a060ecc;hpb=2863477bc61bf5a8aa04279ed8be27fd2b66ca9f;p=jalview.git

diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java
index 9de07dd..f5d34a6 100755
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -518,6 +518,10 @@ public class AlignmentAnnotation
     this.label = annotation.label;
     this.padGaps = annotation.padGaps;
     this.visible = annotation.visible;
+    this.centreColLabels=annotation.centreColLabels;
+    this.scaleColLabel=annotation.scaleColLabel;
+    this.showAllColLabels=annotation.showAllColLabels;
+    this.calcId = annotation.calcId;
     if (this.hasScore = annotation.hasScore)
     {
       this.score = annotation.score;
@@ -567,6 +571,11 @@ public class AlignmentAnnotation
         }
       }
     }
+    // TODO: check if we need to do this: JAL-952
+    //if (this.isrna=annotation.isrna)
+    {
+      // _rnasecstr=new SequenceFeature[annotation._rnasecstr];
+    }
     validateRangeAndDisplay(); // construct hashcodes, etc.
   }