X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentI.java;h=186136f990e7536cb5ee923c3f2919c2d07761c3;hb=1dabf099b7c77fb0a80039f72cef34669df9b2e1;hp=d9791f114eafb0fd8b97fefc865a757ca96595a5;hpb=482e093c4670a813c9eec254990178b209e32dbc;p=jalview.git

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index d9791f1..186136f 100755
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  * 
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -379,6 +379,14 @@ public interface AlignmentI
    * Justify the sequences to the left or right by deleting and inserting gaps before the initial residue or after the terminal residue
    * @param right true if alignment padded to right, false to justify to left
    * @return true if alignment was changed
+   * TODO: return undo object
    */
   public boolean justify(boolean right);
+
+  /**
+   * add given annotation row at given position (0 is start, -1 is end)
+   * @param consensus
+   * @param i
+   */
+  public void addAnnotation(AlignmentAnnotation consensus, int i);
 }