X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentI.java;h=561706f43355bcf416281216ebe19020310c4d82;hb=c9a198a4eb76592ff9091cdba7d0299a0345ba09;hp=2e61f9d6001a9dd17529baae7d6bbf5ef6a09c94;hpb=d1707d4c26db76cfeb640f0dbeb3e3427fd40eb7;p=jalview.git

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index 2e61f9d..561706f 100755
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -590,5 +590,11 @@ public interface AlignmentI extends AnnotatedCollectionI
   public int[] getVisibleStartAndEndIndex(List<int[]> hiddenCols);
 
   public void setHiddenColumns(HiddenColumns cols);
+  
+  public List<SequenceI> getHMMConsensusSequences(boolean remove);
+
+  void insertSequenceAt(int i, SequenceI snew);
+
+  
 
 }