X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentI.java;h=ebfb0ce3cc8a21c2f5dabece7e8497e50edada15;hb=601989c95175f5ad883e73c4aa07a76713510d1f;hp=10ea1542cd7bae2cbe582fe61eeb036dfe1f92f1;hpb=81bf67e64fade340738792bfbcd8b3a3efd3a010;p=jalview.git

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index 10ea154..ebfb0ce 100755
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -225,11 +225,6 @@ public interface AlignmentI
      */
     public void addAnnotation(AlignmentAnnotation aa);
 
-    /**
-     * Adds a new AlignmentAnnotation to this alignment,
-     *  associated to Sequence starting at sequence index
-     */
-    public AlignmentAnnotation addAnnotation(AlignmentAnnotation aa, SequenceI seqRef);
 
     public void setAnnotationIndex(AlignmentAnnotation aa, int index);
 
@@ -292,7 +287,8 @@ public interface AlignmentI
      */
     public boolean padGaps();
 
-     public void adjustSequenceAnnotations();
+    public void adjustSequenceAnnotations();
 
+    public HiddenSequences getHiddenSequences();
 
 }