X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentI.java;h=f1db4c0eba8c3ba31ef4a25d3092056956185555;hb=8c7a9e1133d84d0d80db855f85b052a737c245f3;hp=f1238ffda2a975f196f890d8a62594051ef76a40;hpb=36dceb54710feb97a81f4bd69ad051f316141dc3;p=jalview.git

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index f1238ff..f1db4c0 100755
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -41,7 +41,8 @@ public interface AlignmentI extends AnnotatedCollectionI
    * 
    * Calculates the maximum width of the alignment, including gaps.
    * 
-   * @return Greatest sequence length within alignment.
+   * @return Greatest sequence length within alignment, or -1 if no sequences
+   *         present
    */
   @Override
   int getWidth();
@@ -363,14 +364,6 @@ public interface AlignmentI extends AnnotatedCollectionI
   void addCodonFrame(AlignedCodonFrame codons);
 
   /**
-   * add a set of aligned codons mappings for this alignment, apart from any
-   * duplicates which are ignored
-   * 
-   * @param codons
-   */
-  void addCodonFrames(Iterable<AlignedCodonFrame> codons);
-
-  /**
    * remove a particular codon frame reference from this alignment
    * 
    * @param codons