X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentOrder.java;h=639dd470fba2e157f9cd4d61962e5bc9d039fa03;hb=2d7deb9d3e1ddc98abae846c8ffbc62606b023be;hp=9a2ed8cb77915f33d837c7666288213d50d64fe6;hpb=54904100ca490c7ca4484a88bf40963e48a35eec;p=jalview.git

diff --git a/src/jalview/datamodel/AlignmentOrder.java b/src/jalview/datamodel/AlignmentOrder.java
index 9a2ed8c..639dd47 100755
--- a/src/jalview/datamodel/AlignmentOrder.java
+++ b/src/jalview/datamodel/AlignmentOrder.java
@@ -1,6 +1,6 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  *
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -171,7 +171,7 @@ public class AlignmentOrder
      * replaces oldref with newref in the alignment order.
      * @param oldref
      * @param newref
-     * @return
+     * @return true if oldref was contained in order and replaced with newref
      */
     public boolean updateSequence(SequenceI oldref, SequenceI newref) {
       int found=Order.indexOf(oldref);