X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentOrder.java;h=ef46d79e8bf8bc1d22754ef8d765c5f6f3a43443;hb=57447cbc359ed9a0c8826540079898677ef86660;hp=9023ade8654ccae4af058746f6cd6a7d7dc87562;hpb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;p=jalview.git diff --git a/src/jalview/datamodel/AlignmentOrder.java b/src/jalview/datamodel/AlignmentOrder.java index 9023ade..ef46d79 100755 --- a/src/jalview/datamodel/AlignmentOrder.java +++ b/src/jalview/datamodel/AlignmentOrder.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9) - * Copyright (C) 2015 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -80,7 +80,7 @@ public class AlignmentOrder */ public AlignmentOrder(AlignmentI orderFrom) { - Order = new ArrayList(); + Order = new ArrayList<>(); for (SequenceI seq : orderFrom.getSequences()) { @@ -96,7 +96,7 @@ public class AlignmentOrder */ public AlignmentOrder(SequenceI[] orderFrom) { - Order = new ArrayList(Arrays.asList(orderFrom)); + Order = new ArrayList<>(Arrays.asList(orderFrom)); } /** @@ -218,7 +218,8 @@ public class AlignmentOrder { if (!identity) { - throw new Error("Weak sequenceI equivalence not yet implemented."); + throw new Error( + "Weak sequenceI equivalence not yet implemented."); } else { @@ -285,7 +286,8 @@ public class AlignmentOrder } if (!identity) { - throw new Error("Weak sequenceI equivalence not yet implemented."); + throw new Error( + "Weak sequenceI equivalence not yet implemented."); } else {