X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentView.java;h=c5019d1aec59e94643326637f47377798c8a572d;hb=0e2054d29bc49351f000d478659dc3c4371b251c;hp=37f5e5c5b80e95c6f8ade149b3d048880d64b1bc;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git

diff --git a/src/jalview/datamodel/AlignmentView.java b/src/jalview/datamodel/AlignmentView.java
index 37f5e5c..c5019d1 100644
--- a/src/jalview/datamodel/AlignmentView.java
+++ b/src/jalview/datamodel/AlignmentView.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -14,6 +14,7 @@
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.datamodel;
 
@@ -45,6 +46,16 @@ public class AlignmentView
    */
   private Vector scGroups;
 
+  private boolean isNa=false;
+  /**
+   * false if the view concerns peptides
+   * @return
+   */
+  public boolean isNa()
+  {
+    return isNa;
+  }
+
   /**
    * Group defined over SeqCigars. Unlike AlignmentI associated groups, each
    * SequenceGroup hold just the essential properties for the group, but no
@@ -98,6 +109,7 @@ public class AlignmentView
             (selectedRegionOnly ? selection : null)),
             (selectedRegionOnly && selection != null) ? selection
                     .getStartRes() : 0);
+    isNa = alignment.isNucleotide();
     // walk down SeqCigar array and Alignment Array - optionally restricted by
     // selected region.
     // test group membership for each sequence in each group, store membership