X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentView.java;h=efb7c4ac1553193ea364dc4e1982abcbfb94cbc0;hb=bdba25716eaa9492681532cb443c18ed34237488;hp=6c4cfaea44ecabdc17b643f00a7ed5046675d03b;hpb=7ab5d6b0ba5fec1ea4a4239e79c476d841622485;p=jalview.git diff --git a/src/jalview/datamodel/AlignmentView.java b/src/jalview/datamodel/AlignmentView.java index 6c4cfae..efb7c4a 100644 --- a/src/jalview/datamodel/AlignmentView.java +++ b/src/jalview/datamodel/AlignmentView.java @@ -20,6 +20,7 @@ */ package jalview.datamodel; +import jalview.util.MessageManager; import jalview.util.ShiftList; import java.io.PrintStream; @@ -241,8 +242,7 @@ public class AlignmentView { if (!seqcigararray.isSeqCigarArray()) { - throw new Error( - "Implementation Error - can only make an alignment view from a CigarArray of sequences."); + throw new Error(MessageManager.getString("error.implementation_error_can_only_make_alignmnet_from_cigararray")); } // contigs = seqcigararray.applyDeletions(); contigs = seqcigararray.getDeletedRegions(); @@ -652,7 +652,7 @@ public class AlignmentView { if (sequences == null || width <= 0) { - throw new Error("empty view cannot be updated."); + throw new Error(MessageManager.getString("error.empty_view_cannot_be_updated")); } if (nvismsa == null) { @@ -682,11 +682,7 @@ public class AlignmentView j++; if (mseq.length != sequences.length) { - throw new Error( - "Mismatch between number of sequences in block " - + j + " (" + mseq.length - + ") and the original view (" - + sequences.length + ")"); + throw new Error(MessageManager.formatMessage("error.mismatch_between_number_of_sequences_in_block", new String[]{Integer.valueOf(j).toString(),Integer.valueOf(mseq.length).toString(),Integer.valueOf(sequences.length).toString() })); } swidth = mseq[0].getLength(); // JBPNote: could ensure padded // here. @@ -839,7 +835,7 @@ public class AlignmentView else { // place gaps. - throw new Error("Padding not yet implemented."); + throw new Error(MessageManager.getString("error.padding_not_yet_implemented")); } } } @@ -852,9 +848,7 @@ public class AlignmentView { if (nvismsa.length != 1) { - throw new Error( - "Mismatch between visible blocks to update and number of contigs in view (contigs=0,blocks=" - + nvismsa.length); + throw new Error(MessageManager.formatMessage("error.mismatch_between_visible_blocks_to_update_and_number_of_contigs_in_view", new String[]{Integer.valueOf(nvismsa.length).toString()})); } if (nvismsa[0] != null) {