X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAnnotatedCollectionI.java;h=6814b7e98960778bc8a9100396aa15758aeb6acf;hb=b5d61763044c1d72f06ce0e50da2171422a3774b;hp=085fb705f8f9e1b703fbfa9ae3c05820518c5882;hpb=ef23315db576f5451de0fcb850f645c5db222b20;p=jalview.git
diff --git a/src/jalview/datamodel/AnnotatedCollectionI.java b/src/jalview/datamodel/AnnotatedCollectionI.java
index 085fb70..6814b7e 100644
--- a/src/jalview/datamodel/AnnotatedCollectionI.java
+++ b/src/jalview/datamodel/AnnotatedCollectionI.java
@@ -1,14 +1,46 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.datamodel;
-public interface AnnotatedCollectionI
+public interface AnnotatedCollectionI extends SequenceCollectionI
{
/**
- * TODO: decide if null is a valid response if there is no annotation on the object
+ * TODO: decide if null is a valid response if there is no annotation on the
+ * object
+ *
* @return null
*/
AlignmentAnnotation[] getAlignmentAnnotation();
Iterable findAnnotation(String calcId);
+ Iterable findAnnotations(SequenceI seq,
+ String calcId, String label);
+
+ /**
+ * context for this annotated collection
+ *
+ * @return null or the collection upon which this collection is defined (e.g.
+ * alignment, parent group).
+ */
+ AnnotatedCollectionI getContext();
}