X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAnnotation.java;h=18e4ee7533f25d14756ea7757085d8a57688038b;hb=8b08ad675b71e43e127d7be3b65c6d2f9d9094db;hp=7858e3f85cedca267fac775ae16908ba95da128e;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git

diff --git a/src/jalview/datamodel/Annotation.java b/src/jalview/datamodel/Annotation.java
index 7858e3f..18e4ee7 100755
--- a/src/jalview/datamodel/Annotation.java
+++ b/src/jalview/datamodel/Annotation.java
@@ -1,44 +1,79 @@
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+/*
+* Jalview - A Sequence Alignment Editor and Viewer
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+*
+* This program is free software; you can redistribute it and/or
+* modify it under the terms of the GNU General Public License
+* as published by the Free Software Foundation; either version 2
+* of the License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with this program; if not, write to the Free Software
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
 */
 package jalview.datamodel;
 
 import java.awt.*;
 
 
-public class Annotation {
+/**
+ * DOCUMENT ME!
+ *
+ * @author $author$
+ * @version $Revision$
+ */
+public class Annotation
+{
+    /** DOCUMENT ME!! */
     public String displayCharacter = "";
+
+    /** DOCUMENT ME!! */
     public String description = ""; // currently used as mouse over
+
+    /** DOCUMENT ME!! */
     public char secondaryStructure = ' '; // recognises H and E
+
+    /** DOCUMENT ME!! */
     public float value;
 
     // add visual cues here
+
+    /** DOCUMENT ME!! */
     public Color colour = Color.black;
 
-    public Annotation(String displayChar, String desc, char ss, float val) {
+    /**
+     * Creates a new Annotation object.
+     *
+     * @param displayChar DOCUMENT ME!
+     * @param desc DOCUMENT ME!
+     * @param ss DOCUMENT ME!
+     * @param val DOCUMENT ME!
+     */
+    public Annotation(String displayChar, String desc, char ss, float val)
+    {
         displayCharacter = displayChar;
         description = desc;
         secondaryStructure = ss;
         value = val;
     }
 
+    /**
+     * Creates a new Annotation object.
+     *
+     * @param displayChar DOCUMENT ME!
+     * @param desc DOCUMENT ME!
+     * @param ss DOCUMENT ME!
+     * @param val DOCUMENT ME!
+     * @param colour DOCUMENT ME!
+     */
     public Annotation(String displayChar, String desc, char ss, float val,
-        Color colour) {
+        Color colour)
+    {
         this(displayChar, desc, ss, val);
         this.colour = colour;
     }