X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAnnotation.java;h=2316d134e8e00c6baeca4e6b467dbf7a4ec4c291;hb=019042a9f87d94260b3060cdf45ab93ca714a46d;hp=7858e3f85cedca267fac775ae16908ba95da128e;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git

diff --git a/src/jalview/datamodel/Annotation.java b/src/jalview/datamodel/Annotation.java
index 7858e3f..2316d13 100755
--- a/src/jalview/datamodel/Annotation.java
+++ b/src/jalview/datamodel/Annotation.java
@@ -21,24 +21,59 @@ package jalview.datamodel;
 import java.awt.*;
 
 
-public class Annotation {
+/**
+ * DOCUMENT ME!
+ *
+ * @author $author$
+ * @version $Revision$
+ */
+public class Annotation
+{
+    /** DOCUMENT ME!! */
     public String displayCharacter = "";
+
+    /** DOCUMENT ME!! */
     public String description = ""; // currently used as mouse over
+
+    /** DOCUMENT ME!! */
     public char secondaryStructure = ' '; // recognises H and E
+
+    /** DOCUMENT ME!! */
     public float value;
 
     // add visual cues here
+
+    /** DOCUMENT ME!! */
     public Color colour = Color.black;
 
-    public Annotation(String displayChar, String desc, char ss, float val) {
+    /**
+     * Creates a new Annotation object.
+     *
+     * @param displayChar DOCUMENT ME!
+     * @param desc DOCUMENT ME!
+     * @param ss DOCUMENT ME!
+     * @param val DOCUMENT ME!
+     */
+    public Annotation(String displayChar, String desc, char ss, float val)
+    {
         displayCharacter = displayChar;
         description = desc;
         secondaryStructure = ss;
         value = val;
     }
 
+    /**
+     * Creates a new Annotation object.
+     *
+     * @param displayChar DOCUMENT ME!
+     * @param desc DOCUMENT ME!
+     * @param ss DOCUMENT ME!
+     * @param val DOCUMENT ME!
+     * @param colour DOCUMENT ME!
+     */
     public Annotation(String displayChar, String desc, char ss, float val,
-        Color colour) {
+        Color colour)
+    {
         this(displayChar, desc, ss, val);
         this.colour = colour;
     }