X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAnnotation.java;h=e0c49c8ab5ab8df48a5745309f6f1fa61fc42ea6;hb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;hp=b99ce9f2cf05205b0a78da5dadee9dab5c2e97a0;hpb=99c58ee0ae2a848f982552e53feaf6d5cb9925e5;p=jalview.git

diff --git a/src/jalview/datamodel/Annotation.java b/src/jalview/datamodel/Annotation.java
index b99ce9f..e0c49c8 100755
--- a/src/jalview/datamodel/Annotation.java
+++ b/src/jalview/datamodel/Annotation.java
@@ -1,44 +1,79 @@
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
-*/
-
-package jalview.datamodel;
-import java.awt.*;
-
-public class Annotation
-{
-  public String displayCharacter="";
-  public String description="";       // currently used as mouse over
-  public char secondaryStructure=' '; // recognises H and E
-  public float value;
-
-  // add visual cues here
-  public Color colour = Color.black;
-
-  public Annotation(String displayChar, String desc, char ss, float val)
-  {
-    displayCharacter = displayChar;
-    description = desc;
-    secondaryStructure = ss;
-    value = val;
-  }
-  public Annotation(String displayChar, String desc, char ss, float val, Color colour) {
-    this(displayChar, desc, ss, val);
-    this.colour = colour;
-  }
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ */
+package jalview.datamodel;
+
+import java.awt.*;
+
+/**
+ * DOCUMENT ME!
+ *
+ * @author $author$
+ * @version $Revision$
+ */
+public class Annotation
+{
+  /** DOCUMENT ME!! */
+  public String displayCharacter = "";
+
+  /** DOCUMENT ME!! */
+  public String description = ""; // currently used as mouse over
+
+  /** DOCUMENT ME!! */
+  public char secondaryStructure = ' '; // recognises H and E
+
+  /** DOCUMENT ME!! */
+  public float value;
+
+  // add visual cues here
+
+  /** DOCUMENT ME!! */
+  public Color colour = Color.black;
+
+  /**
+   * Creates a new Annotation object.
+   *
+   * @param displayChar DOCUMENT ME!
+   * @param desc DOCUMENT ME!
+   * @param ss DOCUMENT ME!
+   * @param val DOCUMENT ME!
+   */
+  public Annotation(String displayChar, String desc, char ss, float val)
+  {
+    displayCharacter = displayChar;
+    description = desc;
+    secondaryStructure = ss;
+    value = val;
+  }
+
+  /**
+   * Creates a new Annotation object.
+   *
+   * @param displayChar DOCUMENT ME!
+   * @param desc DOCUMENT ME!
+   * @param ss DOCUMENT ME!
+   * @param val DOCUMENT ME!
+   * @param colour DOCUMENT ME!
+   */
+  public Annotation(String displayChar, String desc, char ss, float val,
+                    Color colour)
+  {
+    this(displayChar, desc, ss, val);
+    this.colour = colour;
+  }
+}