X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FBinaryNode.java;h=c0ff0e4e642f623369b0f33f25947608f6d71e97;hb=e1dbbc5edc07f65706eeb1dda9f4c9bcdee9d3a5;hp=9be34b4974a333eae44d6c91359616bf813af3dc;hpb=506d60f0e188723ddc91c26824b41ac7034df3fe;p=jalview.git

diff --git a/src/jalview/datamodel/BinaryNode.java b/src/jalview/datamodel/BinaryNode.java
index 9be34b4..c0ff0e4 100755
--- a/src/jalview/datamodel/BinaryNode.java
+++ b/src/jalview/datamodel/BinaryNode.java
@@ -1,20 +1,22 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
  * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.datamodel;
 
@@ -52,11 +54,11 @@ public class BinaryNode
    * Creates a new BinaryNode object.
    * 
    * @param element
-   *                DOCUMENT ME!
+   *          DOCUMENT ME!
    * @param parent
-   *                DOCUMENT ME!
+   *          DOCUMENT ME!
    * @param name
-   *                DOCUMENT ME!
+   *          DOCUMENT ME!
    */
   public BinaryNode(Object element, BinaryNode parent, String name)
   {
@@ -81,7 +83,7 @@ public class BinaryNode
    * DOCUMENT ME!
    * 
    * @param v
-   *                DOCUMENT ME!
+   *          DOCUMENT ME!
    * 
    * @return DOCUMENT ME!
    */
@@ -104,7 +106,7 @@ public class BinaryNode
    * DOCUMENT ME!
    * 
    * @param n
-   *                DOCUMENT ME!
+   *          DOCUMENT ME!
    * 
    * @return DOCUMENT ME!
    */
@@ -127,7 +129,7 @@ public class BinaryNode
    * DOCUMENT ME!
    * 
    * @param n
-   *                DOCUMENT ME!
+   *          DOCUMENT ME!
    * 
    * @return DOCUMENT ME!
    */
@@ -150,7 +152,7 @@ public class BinaryNode
    * DOCUMENT ME!
    * 
    * @param n
-   *                DOCUMENT ME!
+   *          DOCUMENT ME!
    * 
    * @return DOCUMENT ME!
    */
@@ -258,10 +260,11 @@ public class BinaryNode
   }
 
   /**
-   * DOCUMENT ME!
    * 
-   * @param name
-   *                DOCUMENT ME!
+   * set the display name
+   * 
+   * @param new
+   *          name
    */
   public void setName(String name)
   {
@@ -269,9 +272,9 @@ public class BinaryNode
   }
 
   /**
-   * DOCUMENT ME!
    * 
-   * @return DOCUMENT ME!
+   * 
+   * @return the display name for this node
    */
   public String getName()
   {
@@ -279,10 +282,9 @@ public class BinaryNode
   }
 
   /**
-   * DOCUMENT ME!
+   * set integer bootstrap value
    * 
    * @param boot
-   *                DOCUMENT ME!
    */
   public void setBootstrap(int boot)
   {
@@ -290,9 +292,9 @@ public class BinaryNode
   }
 
   /**
-   * DOCUMENT ME!
+   * get bootstrap
    * 
-   * @return DOCUMENT ME!
+   * @return integer value
    */
   public int getBootstrap()
   {