X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FBinarySequence.java;h=90b8be7860718cfc8e23df021d7226be8d63ba55;hb=67428050d76de7946d96d43ba16ee02d439026bd;hp=fccd84c56b1b27b80b504a06dbc1af4b365a3b49;hpb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;p=jalview.git

diff --git a/src/jalview/datamodel/BinarySequence.java b/src/jalview/datamodel/BinarySequence.java
index fccd84c..90b8be7 100755
--- a/src/jalview/datamodel/BinarySequence.java
+++ b/src/jalview/datamodel/BinarySequence.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,8 +20,8 @@
  */
 package jalview.datamodel;
 
+import jalview.analysis.scoremodels.ScoreMatrix;
 import jalview.schemes.ResidueProperties;
-import jalview.schemes.ScoreMatrix;
 
 /**
  * Encode a sequence as a numeric vector using either classic residue binary
@@ -132,7 +132,7 @@ public class BinarySequence extends Sequence
             : ResidueProperties.aaIndex, matrix.getMatrix());
   }
 
-  private void matrixEncode(final int[] aaIndex, final int[][] matrix)
+  private void matrixEncode(final int[] aaIndex, final float[][] matrix)
   {
     // Set all matrix to 0
     // dbinary = new double[getSequence().length * 21];