X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FBinarySequence.java;h=af10e1d180a37114726ace7c78888867c4f25d5c;hb=d587f1aa61946dc14f6f089cf1dc2a3116cfb773;hp=7d034041258e80654a0721825f290d1ac572946a;hpb=b8b5c2410e8814caf24d216545f2266c8854f963;p=jalview.git

diff --git a/src/jalview/datamodel/BinarySequence.java b/src/jalview/datamodel/BinarySequence.java
index 7d03404..af10e1d 100755
--- a/src/jalview/datamodel/BinarySequence.java
+++ b/src/jalview/datamodel/BinarySequence.java
@@ -1,6 +1,6 @@
 /*
 * Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
@@ -64,9 +64,7 @@ public class BinarySequence extends Sequence
 
             try
             {
-                aanum = ((Integer) ResidueProperties.getAAHash().get(getSequence()
-                                                                         .substring(i,
-                            i + 1))).intValue();
+                aanum = ResidueProperties.aaIndex[getSequence().charAt(i)];
             }
             catch (NullPointerException e)
             {
@@ -101,9 +99,7 @@ public class BinarySequence extends Sequence
 
             try
             {
-                aanum = ((Integer) ResidueProperties.getAAHash().get(getSequence()
-                                                                         .substring(i,
-                            i + 1))).intValue();
+                aanum = ResidueProperties.aaIndex[getSequence().charAt(i)];
             }
             catch (NullPointerException e)
             {