X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FBinarySequence.java;h=b7e15a6ba5fd9c51f3658092cacd348c49b55983;hb=880ac1d11c2ebf7a81e8230141f63238b392e516;hp=da41c440bf654fe408840ca1e98e6792ea947036;hpb=fcb39fa3bc47777bf4e0eb209f765dd254dc3cb9;p=jalview.git

diff --git a/src/jalview/datamodel/BinarySequence.java b/src/jalview/datamodel/BinarySequence.java
index da41c44..b7e15a6 100755
--- a/src/jalview/datamodel/BinarySequence.java
+++ b/src/jalview/datamodel/BinarySequence.java
@@ -69,13 +69,9 @@ public class BinarySequence extends Sequence
   {
     int nores = (isNa) ? ResidueProperties.maxNucleotideIndex
             : ResidueProperties.maxProteinIndex;
-    // Set all matrix to 0
+
     dbinary = new double[getSequence().length * nores];
 
-    for (int i = 0; i < dbinary.length; i++)
-    {
-      dbinary[i] = 0.0;
-    }
     return nores;
   }
 
@@ -134,14 +130,8 @@ public class BinarySequence extends Sequence
 
   private void matrixEncode(final int[] aaIndex, final float[][] matrix)
   {
-    // Set all matrix to 0
-    // dbinary = new double[getSequence().length * 21];
-
     int nores = initMatrixGetNoRes();
 
-    // for (int i = 0; i < dbinary.length; i++) {
-    // dbinary[i] = 0.0;
-    // }
     for (int i = 0, iSize = getSequence().length; i < iSize; i++)
     {
       int aanum = nores - 1;