X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FCigarArray.java;h=17e9ea6fc65e17faad9b7f76656fa0f1a30cdf68;hb=cbb46d5c5784c69b3237a97e90bad5dc952b51ac;hp=2aa3efbb7378c9e6a86bcc461697bbf9e3672b38;hpb=7012b60c122812320c562563505e308ce485d7e7;p=jalview.git

diff --git a/src/jalview/datamodel/CigarArray.java b/src/jalview/datamodel/CigarArray.java
index 2aa3efb..17e9ea6 100644
--- a/src/jalview/datamodel/CigarArray.java
+++ b/src/jalview/datamodel/CigarArray.java
@@ -165,24 +165,13 @@ public class CigarArray extends CigarBase
       int hideEnd;
       int last = start;
 
-      Iterator<int[]> regions = hidden.getBoundedIterator(start, end, true);
+      Iterator<int[]> regions = hidden.getBoundedIterator(start, end);
       while (regions.hasNext())
       {
         region = regions.next();
         hideStart = region[0];
         hideEnd = region[1];
 
-        // just move on if hideEnd is before last
-        if (hideEnd < last)
-        {
-          continue;
-        }
-        // exit if next region is after end
-        if (hideStart > end)
-        {
-          break;
-        }
-
         // truncate region at start if last falls in region
         if ((hideStart < last) && (hideEnd >= last))
         {