X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FCigarArray.java;h=837a10bd3942df6240aa9ebc2e98492cae1f5ea1;hb=136c0793b90b72b928c4d77dc109dd5c644e00d3;hp=f6e586227c3c76ef20328b9cdc5a962340620e6b;hpb=37de9310bec3501cbc6381e0c3dcb282fcaad812;p=jalview.git

diff --git a/src/jalview/datamodel/CigarArray.java b/src/jalview/datamodel/CigarArray.java
index f6e5862..837a10b 100644
--- a/src/jalview/datamodel/CigarArray.java
+++ b/src/jalview/datamodel/CigarArray.java
@@ -85,12 +85,12 @@ public class CigarArray extends CigarBase
    * @param columnSelection
    * @param selectionGroup
    */
-  public CigarArray(AlignmentI alignment, ColumnSelection columnSelection,
+  public CigarArray(AlignmentI alignment, HiddenColumns hidden,
           SequenceGroup selectionGroup)
   {
     this(constructSeqCigarArray(alignment, selectionGroup));
     constructFromAlignment(alignment,
-            columnSelection != null ? columnSelection.getHiddenColumns()
+            hidden != null ? hidden.getHiddenRegions()
                     : null, selectionGroup);
   }
 
@@ -218,7 +218,7 @@ public class CigarArray extends CigarBase
   }
 
   /**
-   * @see Cigar.getSequenceAndDeletions
+   * @see CigarBase.getSequenceAndDeletions
    * @param GapChar
    *          char
    * @return Object[][]