X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FColumnSelection.java;h=4a38ec0f5b76a4263457fdc980ecce2daf33d83d;hb=d4271d32477e99e9fbbfa5db3e11f1b79324e60d;hp=4882597912dd1150886c7ecbbfc8ac085c6f3481;hpb=f3d6a13271e3f34dfb4e40d6a2a7df1d392f8014;p=jalview.git

diff --git a/src/jalview/datamodel/ColumnSelection.java b/src/jalview/datamodel/ColumnSelection.java
index 4882597..4a38ec0 100644
--- a/src/jalview/datamodel/ColumnSelection.java
+++ b/src/jalview/datamodel/ColumnSelection.java
@@ -278,22 +278,26 @@ public class ColumnSelection
   }
 
   /**
-   * add a series of start,end (inclusive) ranges to the column selection 
-   * @param rng [start_0, end_0, start_1, end_1, ... ]
-   * @param baseOne - when true, ranges are base 1 and will be mapped to base 0
+   * add a series of start,end (inclusive) ranges to the column selection
+   * 
+   * @param rng
+   *          [start_0, end_0, start_1, end_1, ... ]
+   * @param baseOne
+   *          - when true, ranges are base 1 and will be mapped to base 0
    */
-  public void addRangeOfElements(int[] rng,boolean baseOne)
+  public void addRangeOfElements(int[] rng, boolean baseOne)
   {
-    int base=baseOne ? -1 : 0;
+    int base = baseOne ? -1 : 0;
     for (int c = 0; c < rng.length; c += 2)
     {
       for (int p = rng[c]; p <= rng[c + 1]; p++)
       {
-        selection.add(base+p);
+        selection.add(base + p);
       }
     }
-    
+
   }
+
   /**
    * clears column selection
    */
@@ -603,8 +607,8 @@ public class ColumnSelection
           int cpos = ann_row.sequenceRef.findPosition(column) - 1;
           ContactListI clist = ann_row.sequenceRef
                   .getContactListFor(ann_row, cpos);
-          for (int row = column + 8,
-                  rowEnd = clist.getContactHeight(); row < rowEnd; row++)
+          for (int row = column + 8, rowEnd = clist
+                  .getContactHeight(); row < rowEnd; row++)
           {
             if (filterParams
                     .getThresholdType() == AnnotationFilterParameter.ThresholdType.ABOVE_THRESHOLD