X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FColumnSelection.java;h=786101e07f30065982eef9e19c5988920b5b5f0f;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=589c19bf417aaea1eedee6ffdc3bb5022efa4753;hpb=453439b6b855fd668efeb5d5da446bb996dc0a83;p=jalview.git

diff --git a/src/jalview/datamodel/ColumnSelection.java b/src/jalview/datamodel/ColumnSelection.java
index 589c19b..786101e 100644
--- a/src/jalview/datamodel/ColumnSelection.java
+++ b/src/jalview/datamodel/ColumnSelection.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -1227,9 +1227,16 @@ public class ColumnSelection
         int diff = origseq.getLength() - sq.length();
         while (diff > 0)
         {
-          sq = sq
-                  + ((diff >= sb.length()) ? sb.toString() : sb
-                          .substring(0, diff));
+          //sq = sq
+          //        + ((diff >= sb.length()) ? sb.toString() : sb
+          //                .substring(0, diff));
+          if (diff>=sb.length()) {
+            sq+=sb.toString();
+          } else {
+            char[] buf = new char[diff];
+            sb.getChars(0, diff, buf, 0);
+            sq+=buf.toString();
+          }
           diff = origseq.getLength() - sq.length();
         }
       }