X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FContactListImpl.java;h=7058ac7f4ed1d00bfd67977fed5efa34c4aa0acb;hb=ca160187a050f6d4e50158cd5b51f75c83a7179e;hp=8e806e48e0e2fa393b33a83020075f9722b0ce9c;hpb=4acbc5576fb42bf6f97202811c92a7cfe9900076;p=jalview.git

diff --git a/src/jalview/datamodel/ContactListImpl.java b/src/jalview/datamodel/ContactListImpl.java
index 8e806e4..7058ac7 100644
--- a/src/jalview/datamodel/ContactListImpl.java
+++ b/src/jalview/datamodel/ContactListImpl.java
@@ -1,5 +1,9 @@
 package jalview.datamodel;
 
+import java.awt.Color;
+
+import jalview.renderer.ContactGeometry.contactInterval;
+
 /**
  * helper class to compute min/max/mean for a range on a contact list
  * 
@@ -51,9 +55,9 @@ public class ContactListImpl implements ContactListI
     {
       from_column = 0;
     }
-    if (to_column > getContactHeight())
+    if (to_column >= getContactHeight())
     {
-      to_column = getContactHeight();
+      to_column = getContactHeight()-1;
     }
     ContactRange cr = new ContactRange();
     cr.setFrom_column(from_column);
@@ -84,7 +88,7 @@ public class ContactListImpl implements ContactListI
         }
       }
     }
-    if (tot > 0)
+    if (tot > 0 && to_column>from_column)
     {
       cr.setMean(tot / (1 + to_column - from_column));
     }
@@ -95,4 +99,15 @@ public class ContactListImpl implements ContactListI
     return cr;
   }
 
+  @Override
+  public int[] getMappedPositionsFor(int cStart, int cEnd)
+  {
+    return clist.getMappedPositionsFor(cStart, cEnd);
+  }
+
+  @Override
+  public Color getColourForGroup()
+  {
+    return clist.getColourForGroup();
+  }
 }