X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FDBRefEntry.java;h=93a54607c88dfc8521ce3b8187d87919f1d13ab7;hb=caa5930cf71ef14a4af891f2c17aa4a6e0f72bcf;hp=511287bc2da6a2b8649d1cb7bd01b5edc5ccadc6;hpb=d867cf856b9c0cdcb3d9732691f2c3afe861697c;p=jalview.git

diff --git a/src/jalview/datamodel/DBRefEntry.java b/src/jalview/datamodel/DBRefEntry.java
index 511287b..93a5460 100755
--- a/src/jalview/datamodel/DBRefEntry.java
+++ b/src/jalview/datamodel/DBRefEntry.java
@@ -20,6 +20,8 @@
  */
 package jalview.datamodel;
 
+import java.util.Locale;
+
 import jalview.api.DBRefEntryI;
 import jalview.util.DBRefUtils;
 import jalview.util.MapList;
@@ -40,7 +42,7 @@ public class DBRefEntry implements DBRefEntryI
 
   String canonicalSourceName;
   
-  boolean isCanonicalAccession;
+  boolean isCanonicalAccession=false;
 
   /*
    * maps from associated sequence to the database sequence's coordinate system
@@ -95,7 +97,7 @@ public class DBRefEntry implements DBRefEntryI
           Mapping map,boolean isCanonical)
   {
 	
-    this.source = source.toUpperCase();
+    this.source = source.toUpperCase(Locale.ROOT);
     setVersion(version);
     this.accessionId = accessionId;
     this.map = map;
@@ -306,7 +308,7 @@ public class DBRefEntry implements DBRefEntryI
   public void setAccessionId(String accessionId)
   {
 	  this.accessionId = accessionId;
-//    this.accessionId = (accessionId == null ? "" : accessionId).toUpperCase();
+//    this.accessionId = (accessionId == null ? "" : accessionId).toUpperCase(Locale.ROOT);
   }
 
   /**
@@ -317,7 +319,7 @@ public class DBRefEntry implements DBRefEntryI
   {
 	  this.source = source;
 	  
-//    this.source = (source == null ? "" : source).toUpperCase();
+//    this.source = (source == null ? "" : source).toUpperCase(Locale.ROOT);
 //    this.canonicalSourceName = 	DBRefUtils.getCanonicalName(this.source);
 //    this.sourceKey = DBRefSource.getSourceKey(this.canonicalSourceName);
   }
@@ -326,7 +328,7 @@ public class DBRefEntry implements DBRefEntryI
   public void setVersion(String version)
   {
     this.version = version;
-    this.ucversion = (version == null ? null : version.toUpperCase());
+    this.ucversion = (version == null ? null : version.toUpperCase(Locale.ROOT));
   }
 
   @Override