X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FDBRefSource.java;h=499179b7fd50206297bfe665e3ef491a9f15f9c5;hb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;hp=4d3d680ec73b1bf98be91bac2188c7ca95fc635f;hpb=ab43013b7e357b84b4abade0dba949668dfb2a0e;p=jalview.git

diff --git a/src/jalview/datamodel/DBRefSource.java b/src/jalview/datamodel/DBRefSource.java
index 4d3d680..499179b 100755
--- a/src/jalview/datamodel/DBRefSource.java
+++ b/src/jalview/datamodel/DBRefSource.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -38,12 +38,15 @@ public class DBRefSource
   /**
    * UNIPROT Entry Name
    */
-  public static String UP_NAME = "UNIPROT_NAME";
+  public static String UP_NAME = "UNIPROT_NAME".toUpperCase();
 
   /**
    * Uniprot Knowledgebase/TrEMBL as served from EMBL protein products.
    */
-  public static final String UNIPROTKB = "UniProtKB/TrEMBL";
+  public static final String UNIPROTKB = "UniProtKB/TrEMBL".toUpperCase();
+
+  public static final String EMBLCDSProduct = "EMBLCDSProtein"
+          .toUpperCase();
 
   /**
    * PDB Entry Code
@@ -73,28 +76,24 @@ public class DBRefSource
   /**
    * GeneDB ID
    */
-  public static final String GENEDB = "GeneDB";
+  public static final String GENEDB = "GeneDB".toUpperCase();
 
   /**
    * List of databases whose sequences might have coding regions annotated
    */
-  public static final String[] DNACODINGDBS =
-  { EMBL, EMBLCDS, GENEDB };
+  public static final String[] DNACODINGDBS = { EMBL, EMBLCDS, GENEDB };
 
-  public static final String[] CODINGDBS =
-  { EMBLCDS, GENEDB };
+  public static final String[] CODINGDBS = { EMBLCDS, GENEDB };
 
-  public static final String[] PROTEINDBS =
-  { UNIPROT, PDB, UNIPROTKB };
+  public static final String[] PROTEINDBS = { UNIPROT, PDB, UNIPROTKB,
+      EMBLCDSProduct };
 
-  public static final String[] PROTEINSEQ =
-  { UNIPROT, UNIPROTKB };
+  public static final String[] PROTEINSEQ = { UNIPROT, UNIPROTKB,
+      EMBLCDSProduct };
 
-  public static final String[] PROTEINSTR =
-  { PDB };
+  public static final String[] PROTEINSTR = { PDB };
 
-  public static final String[] DOMAINDBS =
-  { PFAM, RFAM };
+  public static final String[] DOMAINDBS = { PFAM, RFAM };
 
   /**
    * set of unique DBRefSource property constants. These could be used to