X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FDBRefSource.java;h=a2243be9f9389d67fccbd216056d2448b07b35aa;hb=c14d9e8c9ff59de1857d4834ee70e80abf623415;hp=99c68ba8a54d752bfd3b42f7bfb7e3d4699d361d;hpb=409fd993c6e32e999b24082aae107a043a590f8f;p=jalview.git

diff --git a/src/jalview/datamodel/DBRefSource.java b/src/jalview/datamodel/DBRefSource.java
index 99c68ba..a2243be 100755
--- a/src/jalview/datamodel/DBRefSource.java
+++ b/src/jalview/datamodel/DBRefSource.java
@@ -54,6 +54,11 @@ public class DBRefSource
   public static String PDB = "PDB";
 
   /**
+   * mmCIF Entry Code
+   */
+  public static String MMCIF = "mmCIF";
+
+  /**
    * EMBL ID
    */
   public static String EMBL = "EMBL";
@@ -79,19 +84,20 @@ public class DBRefSource
   public static final String GENEDB = "GeneDB".toUpperCase();
 
   /**
-   * List of databases whose sequences might have coding regions annotated
+   * Ensembl
    */
-  public static final String[] DNACODINGDBS = { EMBL, EMBLCDS, GENEDB };
-
-  public static final String[] CODINGDBS = { EMBLCDS, GENEDB };
+  public static final String ENSEMBL = "ENSEMBL";
 
-  public static final String[] PROTEINDBS = { UNIPROT, PDB, UNIPROTKB,
-      EMBLCDSProduct };
+  public static final String ENSEMBLGENOMES = "ENSEMBLGENOMES";
 
-  public static final String[] PROTEINSEQ = { UNIPROT, UNIPROTKB,
-      EMBLCDSProduct };
+  /**
+   * List of databases whose sequences might have coding regions annotated
+   */
+  public static final String[] DNACODINGDBS = { EMBL, EMBLCDS, GENEDB,
+      ENSEMBL };
 
-  public static final String[] PROTEINSTR = { PDB };
+  public static final String[] CODINGDBS = { EMBLCDS, GENEDB, ENSEMBL };
 
-  public static final String[] DOMAINDBS = { PFAM, RFAM };
+  public static final String[] PROTEINDBS = { UNIPROT, PDB, UNIPROTKB,
+      EMBLCDSProduct, ENSEMBL }; // Ensembl ENSP* entries are protein
 }