X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FDBRefSource.java;h=ae99766204523844f7a1a3764114010fad63f870;hb=63bb86fb2312c426063e8cd79de4685c05c4bc35;hp=b1824f7f342e1c75c6f3eb6a1f52bb10d797dafb;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git

diff --git a/src/jalview/datamodel/DBRefSource.java b/src/jalview/datamodel/DBRefSource.java
index b1824f7..ae99766 100755
--- a/src/jalview/datamodel/DBRefSource.java
+++ b/src/jalview/datamodel/DBRefSource.java
@@ -38,12 +38,15 @@ public class DBRefSource
   /**
    * UNIPROT Entry Name
    */
-  public static String UP_NAME = "UNIPROT_NAME";
+  public static String UP_NAME = "UNIPROT_NAME".toUpperCase();
 
   /**
    * Uniprot Knowledgebase/TrEMBL as served from EMBL protein products.
    */
-  public static final String UNIPROTKB = "UniProtKB/TrEMBL";
+  public static final String UNIPROTKB = "UniProtKB/TrEMBL".toUpperCase();
+
+  public static final String EMBLCDSProduct = "EMBLCDSProtein"
+          .toUpperCase();
 
   /**
    * PDB Entry Code
@@ -51,6 +54,11 @@ public class DBRefSource
   public static String PDB = "PDB";
 
   /**
+   * mmCIF Entry Code
+   */
+  public static String MMCIF = "mmCIF";
+
+  /**
    * EMBL ID
    */
   public static String EMBL = "EMBL";
@@ -73,28 +81,24 @@ public class DBRefSource
   /**
    * GeneDB ID
    */
-  public static final String GENEDB = "GeneDB";
+  public static final String GENEDB = "GeneDB".toUpperCase();
 
   /**
    * List of databases whose sequences might have coding regions annotated
    */
-  public static final String[] DNACODINGDBS =
-  { EMBL, EMBLCDS, GENEDB };
+  public static final String[] DNACODINGDBS = { EMBL, EMBLCDS, GENEDB };
 
-  public static final String[] CODINGDBS =
-  { EMBLCDS, GENEDB };
+  public static final String[] CODINGDBS = { EMBLCDS, GENEDB };
 
-  public static final String[] PROTEINDBS =
-  { UNIPROT, PDB, UNIPROTKB };
+  public static final String[] PROTEINDBS = { UNIPROT, PDB, UNIPROTKB,
+      EMBLCDSProduct };
 
-  public static final String[] PROTEINSEQ =
-  { UNIPROT, UNIPROTKB };
+  public static final String[] PROTEINSEQ = { UNIPROT, UNIPROTKB,
+      EMBLCDSProduct };
 
-  public static final String[] PROTEINSTR =
-  { PDB };
+  public static final String[] PROTEINSTR = { PDB };
 
-  public static final String[] DOMAINDBS =
-  { PFAM, RFAM };
+  public static final String[] DOMAINDBS = { PFAM, RFAM };
 
   /**
    * set of unique DBRefSource property constants. These could be used to