X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FDBRefSource.java;h=bd5ea9170b16b3cc66c5ee91e05e6ed9465d55e7;hb=2026a420963f094072607c0495b6369ba96e60c0;hp=3ea26d03406ad6c2ab7d11326e9c541c13e98ee2;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git

diff --git a/src/jalview/datamodel/DBRefSource.java b/src/jalview/datamodel/DBRefSource.java
index 3ea26d0..bd5ea91 100755
--- a/src/jalview/datamodel/DBRefSource.java
+++ b/src/jalview/datamodel/DBRefSource.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -61,6 +61,11 @@ public class DBRefSource
    * PFAM ID
    */
   public static String PFAM = "PFAM";
+  
+  /**
+   * RFAM ID
+   */
+  public static String RFAM = "RFAM";
 
   /**
    * GeneDB ID
@@ -86,7 +91,7 @@ public class DBRefSource
   { PDB };
 
   public static final String[] DOMAINDBS =
-  { PFAM };
+  { PFAM, RFAM };
 
   /**
    * set of unique DBRefSource property constants. These could be used to
@@ -115,7 +120,7 @@ public class DBRefSource
   public static final Object DNACODINGSEQDB = "XONCODING";
 
   /**
-   * DB returns several sequences associated with a protein domain
+   * DB returns several sequences associated with a protein/nucleotide domain
    */
   public static final Object DOMAINDB = "DOMAIN";
 
@@ -125,4 +130,9 @@ public class DBRefSource
    * time.
    */
   public static final Object MULTIACC = "MULTIACC";
+
+  /**
+   * DB query returns an alignment for each accession provided.
+   */
+  public static final Object ALIGNMENTDB = "ALIGNMENTS";
 }