X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FDBRefSource.java;h=f8039bb6341844f2a7a994845f913d67e45c7854;hb=26b115b0a77d521da92a06572d9b7819c2d0d49a;hp=47d108219da87faafeaa324d95675396dc127336;hpb=2ff87ed8f1a344303ed46c9fda7d11fd4d469dc7;p=jalview.git

diff --git a/src/jalview/datamodel/DBRefSource.java b/src/jalview/datamodel/DBRefSource.java
index 47d1082..f8039bb 100755
--- a/src/jalview/datamodel/DBRefSource.java
+++ b/src/jalview/datamodel/DBRefSource.java
@@ -122,6 +122,33 @@ public class DBRefSource
       GENEDB, ENSEMBL, ENSEMBLGENOMES 
       };
 
+public static final String PROTEINDBSKEYS, DNACODINGDBSKEYS;
+
+public static final String[] PROMTYPES;
+
+
+public static final int UNIPROT_MASK = 1;
+
+public static final int ENSEMBL_MASK = 2;
+
+public static final int ALL_MASKS = UNIPROT_MASK | ENSEMBL_MASK;
+
+public static final String PDB_CANONICAL_NAME = PDB;
+
+static {
+	// BH 2019.01.25 trying to speed this up
+	String s = ";";
+	for (int i = PROTEINDBS.length; --i >= 0;)
+		s += PROTEINDBS[i] + ";";
+	PROTEINDBSKEYS = s;	
+	
+	s = ";";
+	for (int i = DNACODINGDBS.length; --i >= 0;)
+		s += DNACODINGDBS[i] + ";";
+	DNACODINGDBSKEYS = s;	
+	
+	PROMTYPES = new String[] { null, ";" + UNIPROT + ";", ";" + ENSEMBL + ";" , ";" + UNIPROT + ";"  + ENSEMBL + ";" };
+}
 
   public static String[] allSourcesFromReflection;