X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FDBRefSource.java;h=fba921158ebc20efe3f4ee077e412341cbfc46ad;hb=72d146eb50571b97a0f1190cbfa01d5d90428764;hp=8783e4f3a712ce7f61efe14a9c919c2da94522e0;hpb=36de360de19fa715542db1cebe98ab65b83db540;p=jalview.git diff --git a/src/jalview/datamodel/DBRefSource.java b/src/jalview/datamodel/DBRefSource.java index 8783e4f..fba9211 100755 --- a/src/jalview/datamodel/DBRefSource.java +++ b/src/jalview/datamodel/DBRefSource.java @@ -23,7 +23,10 @@ package jalview.datamodel; /** * Defines internal constants for unambiguous annotation of DbRefEntry source * strings and describing the data retrieved from external database sources (see - * jalview.ws.DbSourcProxy) + * jalview.ws.DbSourcProxy)
+ * TODO: replace with ontology to allow recognition of particular attributes + * (e.g. protein coding, alignment (ortholog db, paralog db, domain db), + * genomic, transcriptomic, 3D structure providing (PDB, MODBASE, etc) ..). * * @author JimP * @@ -83,6 +86,8 @@ public class DBRefSource */ public static final String ENSEMBL = "ENSEMBL"; + public static final String ENSEMBLGENOMES = "ENSEMBLGENOMES"; + /** * List of databases whose sequences might have coding regions annotated */