X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FDBRefSource.java;h=fba921158ebc20efe3f4ee077e412341cbfc46ad;hb=b07c7cb77f73eecaea77b66b9b5f7f9071e0e1e0;hp=91b49ebef4b33ded9060d790cae8beec80f5bfc2;hpb=4da7d6ec8ef5ff030c6d06d37a099da2d92d7246;p=jalview.git

diff --git a/src/jalview/datamodel/DBRefSource.java b/src/jalview/datamodel/DBRefSource.java
index 91b49eb..fba9211 100755
--- a/src/jalview/datamodel/DBRefSource.java
+++ b/src/jalview/datamodel/DBRefSource.java
@@ -23,7 +23,10 @@ package jalview.datamodel;
 /**
  * Defines internal constants for unambiguous annotation of DbRefEntry source
  * strings and describing the data retrieved from external database sources (see
- * jalview.ws.DbSourcProxy)
+ * jalview.ws.DbSourcProxy) <br/>
+ * TODO: replace with ontology to allow recognition of particular attributes
+ * (e.g. protein coding, alignment (ortholog db, paralog db, domain db),
+ * genomic, transcriptomic, 3D structure providing (PDB, MODBASE, etc) ..).
  * 
  * @author JimP
  * 
@@ -54,11 +57,6 @@ public class DBRefSource
   public static String PDB = "PDB";
 
   /**
-   * mmCIF Entry Code
-   */
-  public static String MMCIF = "mmCIF";
-
-  /**
    * EMBL ID
    */
   public static String EMBL = "EMBL";
@@ -88,6 +86,8 @@ public class DBRefSource
    */
   public static final String ENSEMBL = "ENSEMBL";
 
+  public static final String ENSEMBLGENOMES = "ENSEMBLGENOMES";
+
   /**
    * List of databases whose sequences might have coding regions annotated
    */