X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FHiddenMarkovModel.java;h=4514a4188eaaeeb7ae0c6f372b133d98419681d4;hb=refs%2Fheads%2Ffeatures%2Fhmmer_statistics;hp=bcfa1c995e2267619479e701b3b79e5451f7b2ef;hpb=96356075a122b745936738f478a8ee33ac7e0f0a;p=jalview.git

diff --git a/src/jalview/datamodel/HiddenMarkovModel.java b/src/jalview/datamodel/HiddenMarkovModel.java
index bcfa1c9..4514a41 100644
--- a/src/jalview/datamodel/HiddenMarkovModel.java
+++ b/src/jalview/datamodel/HiddenMarkovModel.java
@@ -16,6 +16,8 @@ import java.util.Scanner;
  */
 public class HiddenMarkovModel
 {
+
+
   // Stores file properties. Do not directly access this field as it contains
   // only string value - use the getter methods. For example, to find the length
   // of theHMM, use getModelLength()to return an int value
@@ -378,7 +380,7 @@ public class HiddenMarkovModel
   public Integer getNodeAlignmentColumn(int nodeIndex)
   {
     Integer value = nodes.get(nodeIndex).getAlignmentColumn();
-   return value;
+    return value - 1;
   }
   
   public char getConsensusResidue(int nodeIndex)