X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FHiddenSequences.java;fp=src%2Fjalview%2Fdatamodel%2FHiddenSequences.java;h=db4c85837f8b04790e229b32a5bec6ea63da2446;hb=d7a7562c9108c21a5dbc32ed4895cf788b748574;hp=0f57a02344893ff958940b7ce4c1fc2f9aae7637;hpb=bb73060aba34b1a61bd863dcfcf969e49a3a5d16;p=jalview.git

diff --git a/src/jalview/datamodel/HiddenSequences.java b/src/jalview/datamodel/HiddenSequences.java
index 0f57a02..db4c858 100755
--- a/src/jalview/datamodel/HiddenSequences.java
+++ b/src/jalview/datamodel/HiddenSequences.java
@@ -283,6 +283,7 @@ public class HiddenSequences
     fAlignmt.alignmentProperties = alignment.getProperties();
     fAlignmt.groups = alignment.getGroups();
     fAlignmt.hasRNAStructure = alignment.hasRNAStructure();
+    fAlignmt.setSeqrep(alignment.getSeqrep());
 
     return fAlignmt;
   }