X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FHiddenSequences.java;h=aefb5ccce6154327489029ceb9afa03f805cd78d;hb=bda12c8fbbfeb46d9754e37084f7cb2ded35476d;hp=e9f6d1f3becf742506e04f4dece6794d93fbbb45;hpb=d6509fcf3a8cc90616e18cb22cec97f85c722bb8;p=jalview.git diff --git a/src/jalview/datamodel/HiddenSequences.java b/src/jalview/datamodel/HiddenSequences.java index e9f6d1f..aefb5cc 100755 --- a/src/jalview/datamodel/HiddenSequences.java +++ b/src/jalview/datamodel/HiddenSequences.java @@ -1,19 +1,22 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) - * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) + * Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - * + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.datamodel; @@ -140,7 +143,8 @@ public class HiddenSequences alignment.deleteSequence(sequence); } - public Vector showAll(Map hiddenRepSequences) + public Vector showAll( + Map hiddenRepSequences) { Vector revealedSeqs = new Vector(); for (int i = 0; i < hiddenSequences.length; i++) @@ -157,7 +161,8 @@ public class HiddenSequences return revealedSeqs; } - public Vector showSequence(int alignmentIndex, Map hiddenRepSequences) + public Vector showSequence(int alignmentIndex, + Map hiddenRepSequences) { Vector revealedSeqs = new Vector(); SequenceI repSequence = alignment.getSequenceAt(alignmentIndex);