X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FMapping.java;h=328b96a05ae88ba1e8ec40bc6e974e32c2a16f0c;hb=refs%2Fheads%2Ffeatures%2FJAL-2446NCList;hp=66425d222f38bb7ee4d888dbf51b0ff9cba8ac26;hpb=d1bb7a31fc091606aedbc255a5766ac79e36fa91;p=jalview.git diff --git a/src/jalview/datamodel/Mapping.java b/src/jalview/datamodel/Mapping.java index 66425d2..328b96a 100644 --- a/src/jalview/datamodel/Mapping.java +++ b/src/jalview/datamodel/Mapping.java @@ -182,8 +182,8 @@ public class Mapping } if (!toRanges.hasNext()) { - throw new NoSuchElementException("Ran out of peptide at position " - + toPosition); + throw new NoSuchElementException( + "Ran out of peptide at position " + toPosition); } currentToRange = toRanges.next(); toPosition = currentToRange[0]; @@ -667,8 +667,8 @@ public class Mapping to[f * 2] = r[0]; to[f * 2 + 1] = r[1]; } - copy.setMap(new MapList(from, to, map.getFromRatio(), map - .getToRatio())); + copy.setMap( + new MapList(from, to, map.getFromRatio(), map.getToRatio())); } return copy; } @@ -715,7 +715,8 @@ public class Mapping * @param gapChar * @return */ - public Iterator getCodonIterator(SequenceI seq, char gapChar) + public Iterator getCodonIterator(SequenceI seq, + char gapChar) { return new AlignedCodonIterator(seq, gapChar); } @@ -726,8 +727,8 @@ public class Mapping @Override public String toString() { - return String.format("%s %s", this.map.toString(), this.to == null ? "" - : this.to.getName()); + return String.format("%s %s", this.map.toString(), + this.to == null ? "" : this.to.getName()); } /**