X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FMapping.java;h=d7b7eb98ff38fa565070834efbbaec448b8d2075;hb=d66775feacb4a7cc43c5296e8ef33811e5e75e79;hp=559ae4cd8b05b9552fa26ca0f0da58bd00b53b85;hpb=c4609f79463d463d471b207a092f4d5af807391d;p=jalview.git diff --git a/src/jalview/datamodel/Mapping.java b/src/jalview/datamodel/Mapping.java index 559ae4c..d7b7eb9 100644 --- a/src/jalview/datamodel/Mapping.java +++ b/src/jalview/datamodel/Mapping.java @@ -20,12 +20,12 @@ */ package jalview.datamodel; -import jalview.util.MapList; - import java.util.Iterator; import java.util.NoSuchElementException; import java.util.Vector; +import jalview.util.MapList; + public class Mapping { /** @@ -663,24 +663,6 @@ public class Mapping return copy; } - public static void main(String[] args) - { - /** - * trite test of the intersectVisContigs method for a simple DNA -> Protein - * exon map and a range of visContigs - */ - MapList fk = new MapList(new int[] - { 1, 6, 8, 13, 15, 23 }, new int[] - { 1, 7 }, 3, 1); - Mapping m = new Mapping(fk); - Mapping m_1 = m.intersectVisContigs(new int[] - { fk.getFromLowest(), fk.getFromHighest() }); - Mapping m_2 = m.intersectVisContigs(new int[] - { 1, 7, 11, 20 }); - System.out.println("" + m_1.map.getFromRanges()); - - } - /** * get the sequence being mapped to - if any *