X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSearchResults.java;h=8d98fc4590e9939af00a5b75e72cd75f166aa524;hb=136c0793b90b72b928c4d77dc109dd5c644e00d3;hp=1bf54757897f3e1b13136e086f28506fcba8eeeb;hpb=8677e6e34e291edc58c1da2fc9c958473754143f;p=jalview.git

diff --git a/src/jalview/datamodel/SearchResults.java b/src/jalview/datamodel/SearchResults.java
index 1bf5475..8d98fc4 100755
--- a/src/jalview/datamodel/SearchResults.java
+++ b/src/jalview/datamodel/SearchResults.java
@@ -219,20 +219,15 @@ public class SearchResults implements SearchResultsI
       m = (Match) _m;
 
       mfound = false;
-      if (m.sequence == sequence)
+      if (m.sequence == sequence
+              || m.sequence == sequence.getDatasetSequence())
       {
         mfound = true;
-        // locate aligned position
         matchStart = sequence.findIndex(m.start) - 1;
-        matchEnd = sequence.findIndex(m.end) - 1;
-      }
-      else if (m.sequence == sequence.getDatasetSequence())
-      {
-        mfound = true;
-        // locate region in local context
-        matchStart = sequence.findIndex(m.start) - 1;
-        matchEnd = sequence.findIndex(m.end) - 1;
+        matchEnd = m.start == m.end ? matchStart : sequence
+                .findIndex(m.end) - 1;
       }
+
       if (mfound)
       {
         if (matchStart <= end && matchEnd >= start)