X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSecondaryStructureAnnotation.java;fp=src%2Fjalview%2Fdatamodel%2FSecondaryStructureAnnotation.java;h=5c3eae92fe8bc695ba6ae2bd6b10d3ab1d769129;hb=a7f8fa9c06d82efbbdbc6a0bf1054bb21610b353;hp=0000000000000000000000000000000000000000;hpb=54b98888f691a29c2bdeedcfc120036e921e73d6;p=jalview.git

diff --git a/src/jalview/datamodel/SecondaryStructureAnnotation.java b/src/jalview/datamodel/SecondaryStructureAnnotation.java
new file mode 100644
index 0000000..5c3eae9
--- /dev/null
+++ b/src/jalview/datamodel/SecondaryStructureAnnotation.java
@@ -0,0 +1,31 @@
+package jalview.datamodel;
+
+import fr.orsay.lri.varna.models.rna.RNA;
+
+public class SecondaryStructureAnnotation extends AlignmentAnnotation
+{
+	
+
+	private static RNA _rna = null;
+	  public SecondaryStructureAnnotation (RNA rna) 
+	  {
+		 super("Secondary Structure", "Un truc trop cool",getAnnotation(rna));
+		 
+	    
+	    _rna = rna;
+	  }
+	
+	  public RNA getRNA()
+	 {
+		  return _rna;
+	 }
+	  public static Annotation[] getAnnotation(RNA rna) 
+	  {
+		  Annotation[] ann =  new Annotation[rna.getSize()];
+			 for(int i=0;i<ann.length;i++)
+			 {	
+				 ann[i] = new Annotation(_rna.getStructDBN(true), "", ' ', 0f);; 
+			 }
+		  return ann;
+	  }
+}