X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSecondaryStructureAnnotation.java;h=e39564846885d24249eda0b9d68f3135e5311b40;hb=refs%2Fheads%2Fbug%2FJAL-3487-splash-JS;hp=8c249ccb454e41a27aef45057b490c08aecb6da9;hpb=47168f025aefdaa044802bd5f8f510ffe43a4808;p=jalview.git

diff --git a/src/jalview/datamodel/SecondaryStructureAnnotation.java b/src/jalview/datamodel/SecondaryStructureAnnotation.java
index 8c249cc..e395648 100644
--- a/src/jalview/datamodel/SecondaryStructureAnnotation.java
+++ b/src/jalview/datamodel/SecondaryStructureAnnotation.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -24,28 +24,31 @@ import fr.orsay.lri.varna.models.rna.RNA;
 
 public class SecondaryStructureAnnotation extends AlignmentAnnotation
 {
-	
-
-	private static RNA _rna = null;
-	  public SecondaryStructureAnnotation (RNA rna) 
-	  {
-		 super("Secondary Structure", "Un truc trop cool",getAnnotation(rna));
-		 
-	    
-	    _rna = rna;
-	  }
-	
-	  public RNA getRNA()
-	 {
-		  return _rna;
-	 }
-	  public static Annotation[] getAnnotation(RNA rna) 
-	  {
-		  Annotation[] ann =  new Annotation[rna.getSize()];
-			 for(int i=0;i<ann.length;i++)
-			 {	
-				 ann[i] = new Annotation(_rna.getStructDBN(true), "", ' ', 0f);; 
-			 }
-		  return ann;
-	  }
+
+  // was static, but that cannot work here
+
+  private RNA _rna = null;
+
+  public SecondaryStructureAnnotation(RNA rna)
+  {
+    super("Secondary Structure", "Un truc trop cool", getAnnotation(rna));
+
+    _rna = rna;
+  }
+
+  public RNA getRNA()
+  {
+    return _rna;
+  }
+
+  public static Annotation[] getAnnotation(RNA rna)
+  {
+    Annotation[] ann = new Annotation[rna.getSize()];
+    for (int i = 0; i < ann.length; i++)
+    {
+      ann[i] = new Annotation(rna.getStructDBN(true), "", ' ', 0f);
+      ;
+    }
+    return ann;
+  }
 }