X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSeqCigar.java;h=34697b366ad1fed635e93a351359f1ed9af3238b;hb=88761692019661894f3d5fa897cccc61c055f339;hp=c2a6a9cdd1b294dade726b95237af449d429f182;hpb=3d0101179759ef157b088ea135423cd909512d9f;p=jalview.git

diff --git a/src/jalview/datamodel/SeqCigar.java b/src/jalview/datamodel/SeqCigar.java
index c2a6a9c..34697b3 100644
--- a/src/jalview/datamodel/SeqCigar.java
+++ b/src/jalview/datamodel/SeqCigar.java
@@ -587,6 +587,7 @@ public class SeqCigar extends CigarSimple
                       + (bounds[2] == 0 ? -1 : bounds[2]));
       seqs[i].setDatasetSequence(ref);
       seqs[i].setDescription(ref.getDescription());
+      SeqsetUtils.SeqCharacterUnhash(seqs[i],alseqs[i].seqProps,true,true);
     }
     if (segments != null)
     {